Detailed information of SNP:
|
SNP ID:
sf0617628314(Gbrowse)
Chromosome: chr06 Position: 17628314 |
Major allele:
T
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 55.81% | 44.19% |
| All Indica | 799 | 87.86% | 12.14% |
| All Japonica | 497 | 1.41% | 98.59% |
| Aus | 67 | 80.60% | 19.40% |
| Indica I | 375 | 88.27% | 11.73% |
| Indica II | 213 | 93.43% | 6.57% |
| Indica Intermediate | 211 | 81.52% | 18.48% |
| Temperate Japonica | 335 | 1.19% | 98.81% |
| Tropical Japonica | 94 | 0.00% | 100.00% |
| Japonica Intermediate | 68 | 4.41% | 95.59% |
| Group VI/Aromatic | 14 | 50.00% | 50.00% |
| Intermediate | 42 | 52.38% | 47.62% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0617628314 | A->T | INTERGENIC | None |