Detailed information of SNP:
|
SNP ID:
sf0617629537(Gbrowse)
Chromosome: chr06 Position: 17629537 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1418 | 59.73% | 40.27% |
| All Indica | 799 | 90.49% | 9.51% |
| All Japonica | 497 | 7.44% | 92.56% |
| Aus | 67 | 82.09% | 17.91% |
| Indica I | 375 | 91.20% | 8.80% |
| Indica II | 213 | 95.31% | 4.69% |
| Indica Intermediate | 211 | 84.36% | 15.64% |
| Temperate Japonica | 335 | 9.55% | 90.45% |
| Tropical Japonica | 94 | 2.13% | 97.87% |
| Japonica Intermediate | 68 | 4.41% | 95.59% |
| Group VI/Aromatic | 14 | 50.00% | 50.00% |
| Intermediate | 41 | 60.98% | 39.02% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0617629537 | C->T | INTERGENIC | None |