Detailed information of SNP:
|
SNP ID:
sf0617629713(Gbrowse)
Chromosome: chr06 Position: 17629713 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1417 | 57.37% | 42.63% |
| All Indica | 799 | 90.24% | 9.76% |
| All Japonica | 497 | 1.21% | 98.79% |
| Aus | 67 | 82.09% | 17.91% |
| Indica I | 375 | 91.20% | 8.80% |
| Indica II | 213 | 94.84% | 5.16% |
| Indica Intermediate | 211 | 83.89% | 16.11% |
| Temperate Japonica | 335 | 0.90% | 99.10% |
| Tropical Japonica | 94 | 0.00% | 100.00% |
| Japonica Intermediate | 68 | 4.41% | 95.59% |
| Group VI/Aromatic | 14 | 50.00% | 50.00% |
| Intermediate | 40 | 60.00% | 40.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0617629713 | G->A | LOC_Os06g30500(LOC_Os06g30500.1) | Synonymous |