Detailed information of SNP:
|
SNP ID:
sf0617630926(Gbrowse)
Chromosome: chr06 Position: 17630926 |
Major allele:
A
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1399 | 58.40% | 41.60% |
| All Indica | 798 | 90.35% | 9.65% |
| All Japonica | 480 | 1.67% | 98.33% |
| Aus | 67 | 82.09% | 17.91% |
| Indica I | 374 | 90.91% | 9.09% |
| Indica II | 213 | 95.31% | 4.69% |
| Indica Intermediate | 211 | 84.36% | 15.64% |
| Temperate Japonica | 325 | 1.54% | 98.46% |
| Tropical Japonica | 90 | 0.00% | 100.00% |
| Japonica Intermediate | 65 | 4.62% | 95.38% |
| Group VI/Aromatic | 14 | 50.00% | 50.00% |
| Intermediate | 40 | 65.00% | 35.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0617630926 | C->A | LOC_Os06g30500(LOC_Os06g30500.1) | Synonymous |