Detailed information of SNP:
|
SNP ID:
sf0617635580(Gbrowse)
Chromosome: chr06 Position: 17635580 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1412 | 93.20% | 6.80% |
| All Indica | 792 | 91.92% | 8.08% |
| All Japonica | 497 | 95.98% | 4.02% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 371 | 92.45% | 7.55% |
| Indica II | 212 | 97.64% | 2.36% |
| Indica Intermediate | 209 | 85.17% | 14.83% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 85.11% | 14.89% |
| Japonica Intermediate | 68 | 91.18% | 8.82% |
| Group VI/Aromatic | 14 | 50.00% | 50.00% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0617635580 | T->A | INTERGENIC | None |