Detailed information of SNP:
|
SNP ID:
sf0617635593(Gbrowse)
Chromosome: chr06 Position: 17635593 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1414 | 93.00% | 7.00% |
| All Indica | 794 | 91.56% | 8.44% |
| All Japonica | 497 | 95.98% | 4.02% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 372 | 92.20% | 7.80% |
| Indica II | 212 | 97.17% | 2.83% |
| Indica Intermediate | 210 | 84.76% | 15.24% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 85.11% | 14.89% |
| Japonica Intermediate | 68 | 91.18% | 8.82% |
| Group VI/Aromatic | 14 | 50.00% | 50.00% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0617635593 | T->C | INTERGENIC | None |