Detailed information of SNP:
|
SNP ID:
sf0617640439(Gbrowse)
Chromosome: chr06 Position: 17640439 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1368 | 89.84% | 10.16% |
| All Indica | 753 | 86.99% | 13.01% |
| All Japonica | 497 | 94.77% | 5.23% |
| Aus | 64 | 95.31% | 4.69% |
| Indica I | 356 | 87.36% | 12.64% |
| Indica II | 197 | 93.91% | 6.09% |
| Indica Intermediate | 200 | 79.50% | 20.50% |
| Temperate Japonica | 335 | 98.51% | 1.49% |
| Tropical Japonica | 94 | 85.11% | 14.89% |
| Japonica Intermediate | 68 | 89.71% | 10.29% |
| Group VI/Aromatic | 13 | 30.77% | 69.23% |
| Intermediate | 41 | 92.68% | 7.32% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0617640439 | A->G | LOC_Os06g30510(LOC_Os06g30510.1) | Non-Synonymous SNP |