Detailed information of SNP:
|
SNP ID:
sf0617641041(Gbrowse)
Chromosome: chr06 Position: 17641041 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1415 | 94.20% | 5.80% |
| All Indica | 796 | 91.33% | 8.67% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 66 | 98.48% | 1.52% |
| Indica I | 374 | 92.51% | 7.49% |
| Indica II | 212 | 94.81% | 5.19% |
| Indica Intermediate | 210 | 85.71% | 14.29% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 50.00% | 50.00% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0617641041 | T->C | LOC_Os06g30510(LOC_Os06g30510.1) | Synonymous |