Detailed information of SNP:
|
SNP ID:
sf0617643370(Gbrowse)
Chromosome: chr06 Position: 17643370 |
Major allele:
C
Minor allele: G Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1327 | 55.54% | 44.46% |
| All Indica | 718 | 29.11% | 70.89% |
| All Japonica | 489 | 97.96% | 2.04% |
| Aus | 64 | 26.56% | 73.44% |
| Indica I | 333 | 28.23% | 71.77% |
| Indica II | 195 | 26.15% | 73.85% |
| Indica Intermediate | 190 | 33.68% | 66.32% |
| Temperate Japonica | 328 | 97.87% | 2.13% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 67 | 97.01% | 2.99% |
| Group VI/Aromatic | 14 | 50.00% | 50.00% |
| Intermediate | 42 | 59.52% | 40.48% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0617643370 | C->G | LOC_Os06g30510(LOC_Os06g30510.1) | INTRON |