Detailed information of SNP:
|
SNP ID:
sf0617643619(Gbrowse)
Chromosome: chr06 Position: 17643619 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1415 | 92.51% | 7.49% |
| All Indica | 796 | 90.95% | 9.05% |
| All Japonica | 497 | 95.77% | 4.23% |
| Aus | 66 | 95.45% | 4.55% |
| Indica I | 373 | 92.23% | 7.77% |
| Indica II | 212 | 93.87% | 6.13% |
| Indica Intermediate | 211 | 85.78% | 14.22% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 85.11% | 14.89% |
| Japonica Intermediate | 68 | 89.71% | 10.29% |
| Group VI/Aromatic | 14 | 50.00% | 50.00% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0617643619 | A->G | LOC_Os06g30510(LOC_Os06g30510.1) | INTRON |