Detailed information of SNP:
|
SNP ID:
sf0617650314(Gbrowse)
Chromosome: chr06 Position: 17650314 |
Major allele:
A
Minor allele: C Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1398 | 51.14% | 48.86% |
| All Indica | 784 | 25.13% | 74.87% |
| All Japonica | 491 | 96.54% | 3.46% |
| Aus | 67 | 19.40% | 80.60% |
| Indica I | 367 | 26.43% | 73.57% |
| Indica II | 209 | 19.14% | 80.86% |
| Indica Intermediate | 208 | 28.85% | 71.15% |
| Temperate Japonica | 329 | 95.74% | 4.26% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 14 | 57.14% | 42.86% |
| Intermediate | 42 | 54.76% | 45.24% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0617650314 | A->C | INTERGENIC | None |