Detailed information of SNP:
|
SNP ID:
sf0617655513(Gbrowse)
Chromosome: chr06 Position: 17655513 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1409 | 96.59% | 3.41% |
| All Indica | 792 | 96.46% | 3.54% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 64 | 75.00% | 25.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 206 | 87.86% | 12.14% |
| Indica Intermediate | 211 | 98.58% | 1.42% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0617655513 | G->A | LOC_Os06g30520(LOC_Os06g30520.1) | Synonymous |