Detailed information of SNP:
|
SNP ID:
sf0617657070(Gbrowse)
Chromosome: chr06 Position: 17657070 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1392 | 51.72% | 48.28% |
| All Indica | 783 | 84.67% | 15.33% |
| All Japonica | 497 | 1.21% | 98.79% |
| Aus | 56 | 41.07% | 58.93% |
| Indica I | 367 | 86.92% | 13.08% |
| Indica II | 208 | 85.10% | 14.90% |
| Indica Intermediate | 208 | 80.29% | 19.71% |
| Temperate Japonica | 335 | 1.19% | 98.81% |
| Tropical Japonica | 94 | 0.00% | 100.00% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 50.00% | 50.00% |
| Intermediate | 42 | 50.00% | 50.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0617657070 | A->G | LOC_Os06g30520(LOC_Os06g30520.1) | INTRON |