Detailed information of SNP:
|
SNP ID:
sf0617661892(Gbrowse)
Chromosome: chr06 Position: 17661892 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1417 | 87.79% | 12.21% |
| All Indica | 798 | 89.72% | 10.28% |
| All Japonica | 496 | 83.67% | 16.33% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 375 | 84.00% | 16.00% |
| Indica II | 213 | 96.71% | 3.29% |
| Indica Intermediate | 210 | 92.86% | 7.14% |
| Temperate Japonica | 335 | 98.51% | 1.49% |
| Tropical Japonica | 93 | 39.78% | 60.22% |
| Japonica Intermediate | 68 | 70.59% | 29.41% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0617661892 | C->T | INTERGENIC | None |