Detailed information of SNP:
|
SNP ID:
sf0617684843(Gbrowse)
Chromosome: chr06 Position: 17684843 |
Major allele:
C
Minor allele: G Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1366 | 84.19% | 15.81% |
| All Indica | 774 | 74.03% | 25.97% |
| All Japonica | 497 | 99.40% | 0.60% |
| Aus | 42 | 88.10% | 11.90% |
| Indica I | 367 | 67.85% | 32.15% |
| Indica II | 212 | 85.85% | 14.15% |
| Indica Intermediate | 195 | 72.82% | 27.18% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 13 | 84.62% | 15.38% |
| Intermediate | 40 | 87.50% | 12.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0617684843 | C->G | LOC_Os06g30570(LOC_Os06g30570.1) | Non-Synonymous SNP |