Detailed information of SNP:
|
SNP ID:
sf0617686677(Gbrowse)
Chromosome: chr06 Position: 17686677 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1405 | 91.03% | 8.97% |
| All Indica | 794 | 95.47% | 4.53% |
| All Japonica | 491 | 85.13% | 14.87% |
| Aus | 65 | 81.54% | 18.46% |
| Indica I | 374 | 96.79% | 3.21% |
| Indica II | 212 | 93.40% | 6.60% |
| Indica Intermediate | 208 | 95.19% | 4.81% |
| Temperate Japonica | 334 | 98.50% | 1.50% |
| Tropical Japonica | 93 | 44.09% | 55.91% |
| Japonica Intermediate | 64 | 75.00% | 25.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 87.80% | 12.20% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0617686677 | A->G | LOC_Os06g30570(LOC_Os06g30570.1) | Non-Synonymous SNP |