Detailed information of SNP:
|
SNP ID:
sf0617686731(Gbrowse)
Chromosome: chr06 Position: 17686731 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1398 | 92.70% | 7.30% |
| All Indica | 791 | 96.97% | 3.03% |
| All Japonica | 486 | 87.45% | 12.55% |
| Aus | 66 | 96.97% | 3.03% |
| Indica I | 372 | 97.04% | 2.96% |
| Indica II | 213 | 97.65% | 2.35% |
| Indica Intermediate | 206 | 96.12% | 3.88% |
| Temperate Japonica | 335 | 98.81% | 1.19% |
| Tropical Japonica | 87 | 51.72% | 48.28% |
| Japonica Intermediate | 64 | 76.56% | 23.44% |
| Group VI/Aromatic | 14 | 42.86% | 57.14% |
| Intermediate | 41 | 82.93% | 17.07% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0617686731 | A->G | LOC_Os06g30570(LOC_Os06g30570.1) | Non-Synonymous SNP |