Detailed information of SNP:
|
SNP ID:
sf0617687891(Gbrowse)
Chromosome: chr06 Position: 17687891 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1232 | 81.09% | 18.91% |
| All Indica | 636 | 68.71% | 31.29% |
| All Japonica | 491 | 99.59% | 0.41% |
| Aus | 57 | 80.70% | 19.30% |
| Indica I | 298 | 74.83% | 25.17% |
| Indica II | 160 | 56.25% | 43.75% |
| Indica Intermediate | 178 | 69.66% | 30.34% |
| Temperate Japonica | 334 | 99.40% | 0.60% |
| Tropical Japonica | 91 | 100.00% | 0.00% |
| Japonica Intermediate | 66 | 100.00% | 0.00% |
| Group VI/Aromatic | 10 | 20.00% | 80.00% |
| Intermediate | 38 | 65.79% | 34.21% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0617687891 | G->A | LOC_Os06g30570(LOC_Os06g30570.1) | Non-Synonymous SNP |