Detailed information of SNP:
|
SNP ID:
sf0617692640(Gbrowse)
Chromosome: chr06 Position: 17692640 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 61.61% | 38.39% |
| All Indica | 798 | 94.24% | 5.76% |
| All Japonica | 497 | 2.82% | 97.18% |
| Aus | 66 | 100.00% | 0.00% |
| Indica I | 374 | 94.92% | 5.08% |
| Indica II | 213 | 92.96% | 7.04% |
| Indica Intermediate | 211 | 94.31% | 5.69% |
| Temperate Japonica | 335 | 1.19% | 98.81% |
| Tropical Japonica | 94 | 8.51% | 91.49% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 64.29% | 35.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0617692640 | A->G | INTERGENIC | None |