Detailed information of SNP:
|
SNP ID:
sf0617702449(Gbrowse)
Chromosome: chr06 Position: 17702449 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 51.97% | 48.03% |
| All Indica | 799 | 21.40% | 78.60% |
| All Japonica | 497 | 99.20% | 0.80% |
| Aus | 66 | 56.06% | 43.94% |
| Indica I | 375 | 23.47% | 76.53% |
| Indica II | 213 | 7.04% | 92.96% |
| Indica Intermediate | 211 | 32.23% | 67.77% |
| Temperate Japonica | 335 | 98.81% | 1.19% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 52.38% | 47.62% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0617702449 | C->T | INTERGENIC | None |