Detailed information of SNP:
|
SNP ID:
sf0617708306(Gbrowse)
Chromosome: chr06 Position: 17708306 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 93.94% | 6.06% |
| All Indica | 799 | 99.25% | 0.75% |
| All Japonica | 496 | 85.28% | 14.72% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 98.12% | 1.88% |
| Indica Intermediate | 211 | 99.05% | 0.95% |
| Temperate Japonica | 335 | 98.81% | 1.19% |
| Tropical Japonica | 93 | 48.39% | 51.61% |
| Japonica Intermediate | 68 | 69.12% | 30.88% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0617708306 | A->T | LOC_Os06g30610(LOC_Os06g30610.1) | Synonymous |