Detailed information of SNP:
|
SNP ID:
sf0617734647(Gbrowse)
Chromosome: chr06 Position: 17734647 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1363 | 62.66% | 37.34% |
| All Indica | 748 | 35.56% | 64.44% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 64 | 84.38% | 15.62% |
| Indica I | 346 | 35.84% | 64.16% |
| Indica II | 201 | 20.90% | 79.10% |
| Indica Intermediate | 201 | 49.75% | 50.25% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 60.00% | 40.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0617734647 | A->T | INTERGENIC | None |