Detailed information of SNP:
|
SNP ID:
sf0617761309(Gbrowse)
Chromosome: chr06 Position: 17761309 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1387 | 93.08% | 6.92% |
| All Indica | 799 | 99.25% | 0.75% |
| All Japonica | 475 | 86.74% | 13.26% |
| Aus | 58 | 67.24% | 32.76% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 211 | 98.58% | 1.42% |
| Temperate Japonica | 333 | 99.40% | 0.60% |
| Tropical Japonica | 79 | 43.04% | 56.96% |
| Japonica Intermediate | 63 | 74.60% | 25.40% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 82.93% | 17.07% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0617761309 | T->C | LOC_Os06g30670(LOC_Os06g30670.1) | INTRON |