Detailed information of SNP:
|
SNP ID:
sf0617764150(Gbrowse)
Chromosome: chr06 Position: 17764150 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1418 | 58.18% | 41.82% |
| All Indica | 799 | 93.62% | 6.38% |
| All Japonica | 497 | 1.41% | 98.59% |
| Aus | 67 | 49.25% | 50.75% |
| Indica I | 375 | 93.60% | 6.40% |
| Indica II | 213 | 93.43% | 6.57% |
| Indica Intermediate | 211 | 93.84% | 6.16% |
| Temperate Japonica | 335 | 1.19% | 98.81% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 58.54% | 41.46% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0617764150 | G->A | LOC_Os06g30670(LOC_Os06g30670.1) | INTRON |