Detailed information of SNP:
|
SNP ID:
sf0617778895(Gbrowse)
Chromosome: chr06 Position: 17778895 |
Major allele:
A
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 57.79% | 42.21% |
| All Indica | 799 | 93.49% | 6.51% |
| All Japonica | 497 | 4.43% | 95.57% |
| Aus | 67 | 44.78% | 55.22% |
| Indica I | 375 | 97.07% | 2.93% |
| Indica II | 213 | 92.49% | 7.51% |
| Indica Intermediate | 211 | 88.15% | 11.85% |
| Temperate Japonica | 335 | 1.19% | 98.81% |
| Tropical Japonica | 94 | 13.83% | 86.17% |
| Japonica Intermediate | 68 | 7.35% | 92.65% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 50.00% | 50.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0617778895 | T->A | INTERGENIC | None |