Detailed information of SNP:
|
SNP ID:
sf0617806144(Gbrowse)
Chromosome: chr06 Position: 17806144 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1410 | 53.19% | 46.81% |
| All Indica | 790 | 22.53% | 77.47% |
| All Japonica | 497 | 99.20% | 0.80% |
| Aus | 67 | 62.69% | 37.31% |
| Indica I | 369 | 27.10% | 72.90% |
| Indica II | 212 | 10.85% | 89.15% |
| Indica Intermediate | 209 | 26.32% | 73.68% |
| Temperate Japonica | 335 | 98.81% | 1.19% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 54.76% | 45.24% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0617806144 | T->C | LOC_Os06g30700(LOC_Os06g30700.1) | Non-Synonymous SNP |