Detailed information of SNP:
|
SNP ID:
sf0617809170(Gbrowse)
Chromosome: chr06 Position: 17809170 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1412 | 52.76% | 47.24% |
| All Indica | 798 | 85.34% | 14.66% |
| All Japonica | 492 | 3.25% | 96.75% |
| Aus | 67 | 46.27% | 53.73% |
| Indica I | 375 | 88.00% | 12.00% |
| Indica II | 212 | 85.85% | 14.15% |
| Indica Intermediate | 211 | 80.09% | 19.91% |
| Temperate Japonica | 335 | 1.19% | 98.81% |
| Tropical Japonica | 91 | 10.99% | 89.01% |
| Japonica Intermediate | 66 | 3.03% | 96.97% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 41.46% | 58.54% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0617809170 | G->A | LOC_Os06g30700(LOC_Os06g30700.1) | INTRON |