Detailed information of SNP:
|
SNP ID:
sf0617810736(Gbrowse)
Chromosome: chr06 Position: 17810736 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1413 | 56.83% | 43.17% |
| All Indica | 794 | 90.55% | 9.45% |
| All Japonica | 497 | 4.23% | 95.77% |
| Aus | 67 | 65.67% | 34.33% |
| Indica I | 372 | 89.52% | 10.48% |
| Indica II | 212 | 91.98% | 8.02% |
| Indica Intermediate | 210 | 90.95% | 9.05% |
| Temperate Japonica | 335 | 1.19% | 98.81% |
| Tropical Japonica | 94 | 12.77% | 87.23% |
| Japonica Intermediate | 68 | 7.35% | 92.65% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 46.34% | 53.66% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0617810736 | C->T | INTERGENIC | None |