Detailed information of SNP:
|
SNP ID:
sf0617814458(Gbrowse)
Chromosome: chr06 Position: 17814458 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1333 | 89.80% | 10.20% |
| All Indica | 719 | 91.52% | 8.48% |
| All Japonica | 497 | 95.77% | 4.23% |
| Aus | 62 | 45.16% | 54.84% |
| Indica I | 311 | 93.57% | 6.43% |
| Indica II | 211 | 95.26% | 4.74% |
| Indica Intermediate | 197 | 84.26% | 15.74% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 86.17% | 13.83% |
| Japonica Intermediate | 68 | 89.71% | 10.29% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 85.37% | 14.63% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0617814458 | A->G | LOC_Os06g30710(LOC_Os06g30710.3) | INTRON |
| sf0617814458 | A->G | LOC_Os06g30710(LOC_Os06g30710.2) | UTR_3_PRIME |
| sf0617814458 | A->G | LOC_Os06g30710(LOC_Os06g30710.1) | UTR_3_PRIME |