Detailed information of SNP:
|
SNP ID:
sf0617814464(Gbrowse)
Chromosome: chr06 Position: 17814464 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1415 | 93.64% | 6.36% |
| All Indica | 798 | 92.48% | 7.52% |
| All Japonica | 497 | 96.38% | 3.62% |
| Aus | 64 | 82.81% | 17.19% |
| Indica I | 375 | 94.67% | 5.33% |
| Indica II | 213 | 95.31% | 4.69% |
| Indica Intermediate | 210 | 85.71% | 14.29% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 86.17% | 13.83% |
| Japonica Intermediate | 68 | 92.65% | 7.35% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0617814464 | G->T | LOC_Os06g30710(LOC_Os06g30710.3) | INTRON |
| sf0617814464 | G->T | LOC_Os06g30710(LOC_Os06g30710.2) | UTR_3_PRIME |
| sf0617814464 | G->T | LOC_Os06g30710(LOC_Os06g30710.1) | UTR_3_PRIME |