Detailed information of SNP:
|
SNP ID:
sf0617820396(Gbrowse)
Chromosome: chr06 Position: 17820396 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 54.65% | 45.35% |
| All Indica | 799 | 89.86% | 10.14% |
| All Japonica | 497 | 0.80% | 99.20% |
| Aus | 67 | 47.76% | 52.24% |
| Indica I | 375 | 92.80% | 7.20% |
| Indica II | 213 | 91.55% | 8.45% |
| Indica Intermediate | 211 | 82.94% | 17.06% |
| Temperate Japonica | 335 | 1.19% | 98.81% |
| Tropical Japonica | 94 | 0.00% | 100.00% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 51.22% | 48.78% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0617820396 | A->G | INTERGENIC | None |