Detailed information of SNP:
|
SNP ID:
sf0617825594(Gbrowse)
Chromosome: chr06 Position: 17825594 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 81.45% | 18.55% |
| All Indica | 798 | 81.20% | 18.80% |
| All Japonica | 497 | 81.69% | 18.31% |
| Aus | 67 | 79.10% | 20.90% |
| Indica I | 375 | 77.60% | 22.40% |
| Indica II | 213 | 91.55% | 8.45% |
| Indica Intermediate | 210 | 77.14% | 22.86% |
| Temperate Japonica | 335 | 98.81% | 1.19% |
| Tropical Japonica | 94 | 29.79% | 70.21% |
| Japonica Intermediate | 68 | 69.12% | 30.88% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0617825594 | T->A | INTERGENIC | None |