Detailed information of SNP:
|
SNP ID:
sf0617825671(Gbrowse)
Chromosome: chr06 Position: 17825671 |
Major allele:
A
Minor allele: C Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1419 | 76.60% | 23.40% |
| All Indica | 799 | 72.84% | 27.16% |
| All Japonica | 497 | 81.69% | 18.31% |
| Aus | 67 | 79.10% | 20.90% |
| Indica I | 375 | 66.67% | 33.33% |
| Indica II | 213 | 83.57% | 16.43% |
| Indica Intermediate | 211 | 72.99% | 27.01% |
| Temperate Japonica | 335 | 98.81% | 1.19% |
| Tropical Japonica | 94 | 29.79% | 70.21% |
| Japonica Intermediate | 68 | 69.12% | 30.88% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 76.19% | 23.81% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0617825671 | A->C | INTERGENIC | None |