Detailed information of SNP:
|
SNP ID:
sf0617828121(Gbrowse)
Chromosome: chr06 Position: 17828121 |
Major allele:
A
Minor allele: C Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1418 | 51.06% | 48.94% |
| All Indica | 798 | 20.05% | 79.95% |
| All Japonica | 497 | 98.59% | 1.41% |
| Aus | 67 | 59.70% | 40.30% |
| Indica I | 374 | 24.06% | 75.94% |
| Indica II | 213 | 9.86% | 90.14% |
| Indica Intermediate | 211 | 23.22% | 76.78% |
| Temperate Japonica | 335 | 97.91% | 2.09% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 47.62% | 52.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0617828121 | A->C | INTERGENIC | None |