Detailed information of SNP:
SNP ID:
sf0617830678(Gbrowse)
Chromosome: chr06 Position: 17830678 |
Major allele:
T
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
---|---|---|---|
All | 1418 | 64.39% | 35.61% |
All Indica | 799 | 97.62% | 2.38% |
All Japonica | 497 | 5.23% | 94.77% |
Aus | 67 | 100.00% | 0.00% |
Indica I | 375 | 98.13% | 1.87% |
Indica II | 213 | 96.24% | 3.76% |
Indica Intermediate | 211 | 98.10% | 1.90% |
Temperate Japonica | 335 | 1.19% | 98.81% |
Tropical Japonica | 94 | 15.96% | 84.04% |
Japonica Intermediate | 68 | 10.29% | 89.71% |
Group VI/Aromatic | 14 | 100.00% | 0.00% |
Intermediate | 41 | 63.41% | 36.59% |
Allele Var Effect:
SNP ID | Var | Gene | Effect/Location |
---|---|---|---|
sf0617830678 | A->T | INTERGENIC | None |