Detailed information of SNP:
|
SNP ID:
sf0617840678(Gbrowse)
Chromosome: chr06 Position: 17840678 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1413 | 64.40% | 35.60% |
| All Indica | 798 | 97.49% | 2.51% |
| All Japonica | 497 | 5.23% | 94.77% |
| Aus | 66 | 100.00% | 0.00% |
| Indica I | 374 | 98.13% | 1.87% |
| Indica II | 213 | 96.24% | 3.76% |
| Indica Intermediate | 211 | 97.63% | 2.37% |
| Temperate Japonica | 335 | 1.19% | 98.81% |
| Tropical Japonica | 94 | 15.96% | 84.04% |
| Japonica Intermediate | 68 | 10.29% | 89.71% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 38 | 68.42% | 31.58% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0617840678 | T->C | LOC_Os06g30760(LOC_Os06g30760.1) | Synonymous |