Detailed information of SNP:
|
SNP ID:
sf0617840828(Gbrowse)
Chromosome: chr06 Position: 17840828 |
Major allele:
T
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1418 | 58.67% | 41.33% |
| All Indica | 798 | 93.48% | 6.52% |
| All Japonica | 497 | 5.03% | 94.97% |
| Aus | 67 | 61.19% | 38.81% |
| Indica I | 374 | 93.32% | 6.68% |
| Indica II | 213 | 94.84% | 5.16% |
| Indica Intermediate | 211 | 92.42% | 7.58% |
| Temperate Japonica | 335 | 1.19% | 98.81% |
| Tropical Japonica | 94 | 15.96% | 84.04% |
| Japonica Intermediate | 68 | 8.82% | 91.18% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 45.24% | 54.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0617840828 | G->T | LOC_Os06g30760(LOC_Os06g30760.1) | Synonymous |