Detailed information of SNP:
|
SNP ID:
sf0617842354(Gbrowse)
Chromosome: chr06 Position: 17842354 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1416 | 58.90% | 41.10% |
| All Indica | 799 | 93.74% | 6.26% |
| All Japonica | 497 | 4.63% | 95.37% |
| Aus | 67 | 61.19% | 38.81% |
| Indica I | 375 | 93.87% | 6.13% |
| Indica II | 213 | 93.90% | 6.10% |
| Indica Intermediate | 211 | 93.36% | 6.64% |
| Temperate Japonica | 335 | 1.19% | 98.81% |
| Tropical Japonica | 94 | 14.89% | 85.11% |
| Japonica Intermediate | 68 | 7.35% | 92.65% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 39 | 53.85% | 46.15% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0617842354 | G->A | LOC_Os06g30760(LOC_Os06g30760.1) | Synonymous |