Detailed information of SNP:
SNP ID:
sf0617843298(Gbrowse)
Chromosome: chr06 Position: 17843298 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
---|---|---|---|
All | 1418 | 63.19% | 36.81% |
All Indica | 799 | 97.62% | 2.38% |
All Japonica | 497 | 4.83% | 95.17% |
Aus | 67 | 100.00% | 0.00% |
Indica I | 375 | 98.13% | 1.87% |
Indica II | 213 | 96.24% | 3.76% |
Indica Intermediate | 211 | 98.10% | 1.90% |
Temperate Japonica | 335 | 1.19% | 98.81% |
Tropical Japonica | 94 | 15.96% | 84.04% |
Japonica Intermediate | 68 | 7.35% | 92.65% |
Group VI/Aromatic | 14 | 7.14% | 92.86% |
Intermediate | 41 | 58.54% | 41.46% |
Allele Var Effect:
SNP ID | Var | Gene | Effect/Location |
---|---|---|---|
sf0617843298 | G->A | INTERGENIC | None |