Detailed information of SNP:
|
SNP ID:
sf0617849080(Gbrowse)
Chromosome: chr06 Position: 17849080 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1416 | 59.25% | 40.75% |
| All Indica | 799 | 93.99% | 6.01% |
| All Japonica | 497 | 5.03% | 94.97% |
| Aus | 67 | 61.19% | 38.81% |
| Indica I | 375 | 94.13% | 5.87% |
| Indica II | 213 | 94.84% | 5.16% |
| Indica Intermediate | 211 | 92.89% | 7.11% |
| Temperate Japonica | 335 | 1.49% | 98.51% |
| Tropical Japonica | 94 | 15.96% | 84.04% |
| Japonica Intermediate | 68 | 7.35% | 92.65% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 39 | 56.41% | 43.59% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0617849080 | C->T | INTERGENIC | None |