Detailed information of SNP:
|
SNP ID:
sf0617851627(Gbrowse)
Chromosome: chr06 Position: 17851627 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1417 | 63.87% | 36.13% |
| All Indica | 799 | 96.12% | 3.88% |
| All Japonica | 497 | 6.04% | 93.96% |
| Aus | 66 | 98.48% | 1.52% |
| Indica I | 375 | 96.27% | 3.73% |
| Indica II | 213 | 96.24% | 3.76% |
| Indica Intermediate | 211 | 95.73% | 4.27% |
| Temperate Japonica | 335 | 1.19% | 98.81% |
| Tropical Japonica | 94 | 19.15% | 80.85% |
| Japonica Intermediate | 68 | 11.76% | 88.24% |
| Group VI/Aromatic | 13 | 92.31% | 7.69% |
| Intermediate | 42 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0617851627 | T->C | INTERGENIC | None |