Detailed information of SNP:
SNP ID:
sf0617851769(Gbrowse)
Chromosome: chr06 Position: 17851769 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
---|---|---|---|
All | 1419 | 94.29% | 5.71% |
All Indica | 799 | 99.50% | 0.50% |
All Japonica | 497 | 85.92% | 14.08% |
Aus | 67 | 100.00% | 0.00% |
Indica I | 375 | 100.00% | 0.00% |
Indica II | 213 | 98.12% | 1.88% |
Indica Intermediate | 211 | 100.00% | 0.00% |
Temperate Japonica | 335 | 98.81% | 1.19% |
Tropical Japonica | 94 | 46.81% | 53.19% |
Japonica Intermediate | 68 | 76.47% | 23.53% |
Group VI/Aromatic | 14 | 100.00% | 0.00% |
Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
SNP ID | Var | Gene | Effect/Location |
---|---|---|---|
sf0617851769 | C->T | INTERGENIC | None |