Detailed information of SNP:
|
SNP ID:
sf0617851942(Gbrowse)
Chromosome: chr06 Position: 17851942 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1405 | 92.67% | 7.33% |
| All Indica | 786 | 87.28% | 12.72% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 367 | 87.19% | 12.81% |
| Indica II | 213 | 98.59% | 1.41% |
| Indica Intermediate | 206 | 75.73% | 24.27% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 97.56% | 2.44% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0617851942 | A->T | INTERGENIC | None |