Detailed information of SNP:
|
SNP ID:
sf0617908930(Gbrowse)
Chromosome: chr06 Position: 17908930 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1406 | 98.58% | 1.42% |
| All Indica | 798 | 99.62% | 0.38% |
| All Japonica | 485 | 96.91% | 3.09% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 212 | 98.58% | 1.42% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 330 | 99.70% | 0.30% |
| Tropical Japonica | 90 | 85.56% | 14.44% |
| Japonica Intermediate | 65 | 98.46% | 1.54% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0617908930 | T->C | LOC_Os06g30850(LOC_Os06g30850.1) | Synonymous |