Detailed information of SNP:
|
SNP ID:
sf0617914680(Gbrowse)
Chromosome: chr06 Position: 17914680 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1312 | 86.05% | 13.95% |
| All Indica | 698 | 94.84% | 5.16% |
| All Japonica | 496 | 81.85% | 18.15% |
| Aus | 65 | 55.38% | 44.62% |
| Indica I | 304 | 93.42% | 6.58% |
| Indica II | 204 | 96.57% | 3.43% |
| Indica Intermediate | 190 | 95.26% | 4.74% |
| Temperate Japonica | 334 | 97.90% | 2.10% |
| Tropical Japonica | 94 | 36.17% | 63.83% |
| Japonica Intermediate | 68 | 66.18% | 33.82% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 39 | 64.10% | 35.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0617914680 | T->C | INTERGENIC | None |