Detailed information of SNP:
|
SNP ID:
sf0617979794(Gbrowse)
Chromosome: chr06 Position: 17979794 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 92.45% | 7.55% |
| All Indica | 799 | 98.37% | 1.63% |
| All Japonica | 496 | 82.46% | 17.54% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 99.20% | 0.80% |
| Indica II | 213 | 97.65% | 2.35% |
| Indica Intermediate | 211 | 97.63% | 2.37% |
| Temperate Japonica | 335 | 97.61% | 2.39% |
| Tropical Japonica | 93 | 37.63% | 62.37% |
| Japonica Intermediate | 68 | 69.12% | 30.88% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0617979794 | C->A | INTERGENIC | None |