Detailed information of SNP:
|
SNP ID:
sf0617991089(Gbrowse)
Chromosome: chr06 Position: 17991089 |
Major allele:
C
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1333 | 92.50% | 7.50% |
| All Indica | 750 | 99.73% | 0.27% |
| All Japonica | 464 | 79.09% | 20.91% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 357 | 99.72% | 0.28% |
| Indica II | 206 | 100.00% | 0.00% |
| Indica Intermediate | 187 | 99.47% | 0.53% |
| Temperate Japonica | 329 | 76.90% | 23.10% |
| Tropical Japonica | 71 | 84.51% | 15.49% |
| Japonica Intermediate | 64 | 84.38% | 15.62% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 38 | 97.37% | 2.63% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0617991089 | A->C | INTERGENIC | None |