Detailed information of SNP:
|
SNP ID:
sf0617995663(Gbrowse)
Chromosome: chr06 Position: 17995663 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1419 | 78.51% | 21.49% |
| All Indica | 799 | 89.11% | 10.89% |
| All Japonica | 497 | 59.15% | 40.85% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 375 | 83.73% | 16.27% |
| Indica II | 213 | 95.77% | 4.23% |
| Indica Intermediate | 211 | 91.94% | 8.06% |
| Temperate Japonica | 335 | 71.94% | 28.06% |
| Tropical Japonica | 94 | 13.83% | 86.17% |
| Japonica Intermediate | 68 | 58.82% | 41.18% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 69.05% | 30.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0617995663 | G->A | INTERGENIC | None |