Detailed information of SNP:
|
SNP ID:
sf0617996475(Gbrowse)
Chromosome: chr06 Position: 17996475 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 78.70% | 21.30% |
| All Indica | 798 | 89.22% | 10.78% |
| All Japonica | 497 | 59.15% | 40.85% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 375 | 83.73% | 16.27% |
| Indica II | 212 | 96.23% | 3.77% |
| Indica Intermediate | 211 | 91.94% | 8.06% |
| Temperate Japonica | 335 | 71.94% | 28.06% |
| Tropical Japonica | 94 | 13.83% | 86.17% |
| Japonica Intermediate | 68 | 58.82% | 41.18% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0617996475 | T->C | INTERGENIC | None |