Detailed information of SNP:
|
SNP ID:
sf0618006089(Gbrowse)
Chromosome: chr06 Position: 18006089 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 84.14% | 15.86% |
| All Indica | 799 | 98.50% | 1.50% |
| All Japonica | 497 | 59.36% | 40.64% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 95.77% | 4.23% |
| Indica Intermediate | 211 | 98.58% | 1.42% |
| Temperate Japonica | 335 | 71.94% | 28.06% |
| Tropical Japonica | 94 | 13.83% | 86.17% |
| Japonica Intermediate | 68 | 60.29% | 39.71% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0618006089 | T->C | LOC_Os06g30950(LOC_Os06g30950.1) | INTRON |
| sf0618006089 | T->C | LOC_Os06g30950(LOC_Os06g30950.2) | INTRON |